Publications

2017

  • X. Sun, W. Pittard, T. Xu, Tianlei, M. Zwick, X. Jiang, F. Wang, and Z. Qin: OmicSeq: A web-based search engine for exploring omics datasets. Nucleic Acids Research, In Press.
  • Shuai Zheng, James J Lu, Nima Ghasemzadeh, Arshed Ali Quyyumi and Fusheng Wang: An Effective Information Extraction Framework for Heterogeneous Clinical Reports Using Online Machine Learning and Controlled Vocabularies. JMIR Medical Informatics, In Press.
  • Pengyue Zhang, Fusheng Wang, George Teodoro, Yanhui Liang, Daniel Brat and Jun Kong: Automated Level Set Segmentation of Histopathologic Cells with Sparse Shape Prior Support and Dynamic Occlusion Constraint. To Appear in Proc. of 2017 IEEE International Symposium on Biomedical Imaging, April 18 - 21, 2017, Melbourne, Australia.
  • Pengyue Zhang, Fusheng Wang and Yefeng Zheng: Self supervised deep representation learning for fine-grained body part recognition. To Appear in Proc. of 2017 IEEE International Symposium on Biomedical Imaging, April 18 - 21, 2017, Melbourne, Australia.
  • Blair Rossetti, Fusheng Wang, Pengyue Zhang, George Teodoro, Daniel Brat and Jun Kong: Dynamic Registration for Gigapixel Serial Whole Slide Images. To Appear in Proc. of 2017 IEEE International Symposium on Biomedical Imaging, April 18 - 21, 2017, Melbourne, Australia.
  • Xin Chen, Yu Wang, Elinor Schoenfeld, Mary Saltz, Joel Saltz and Fusheng Wang: Spatio-temporal Analysis for New York State SPARCS Data. To Appear in Proc. of 2017 AMIA Joint Summits on Translational Science, March 27 - 30, 2017, San Francisco,CA, USA.
  • Yanhui Liang, Fusheng Wang, Pengyue Zhang, Daniel J. Brat, Joel Saltz, Jun Kong: Development of a Framework for Large Scale Three-Dimensional Pathology and Biomarker Imaging and Spatial Analytics. To Appear in Proc. of 2017 AMIA Joint Summits on Translational Science, March 27 - 30, 2017, San Francisco,CA, USA.
  • Naiyun Zhou, Xiaxia Yu, Tianhao Zhao, Si Wen, Fusheng Wang, Wei Zhu, Tahsin Kurc, Allen Tannenbaum, Joel Saltz and Yi Gao: Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis. In Proc. of 2017 SPIE Medical Imaging, February 11, 2017, Orlando, Florida, United States.

2016

  • Xin Chen and Fusheng Wang: Integrative Spatial Data Analytics for Public Health Studies of New York State. To Appear in Proceedings of AMIA 2016 Annual Symposium. Chicago, IL, Nov 12-16, 2016.
  • Yanhui Liang, Hoang Vo, Ablimit Aji, Jun Kong and Fusheng Wang: Scalable 3D Spatial Queries for Analytical Pathology Imaging with MapReduce. Poster Paper. In Proc. of the 24nd ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems (ACM SIGSPATIAL 2016), October 31 to November 3, 2016, San Francisco Bay Area, California, USA.
  • Xin Chen, Hoang Vo, and Fusheng Wang: Annotating Geographical Objects in OpenStreetMap with Geo-tagged Social Media. In Proc. of the 9th ACM SIGSPATIAL International Workshop on Location-Based Social Networks (LBSN 2016), October 31, 2016, San Francisco Bay Area, California, USA.
  • Hoang Vo, Jun Kong, Dejun Teng, Yanhui Liang, Ablimit Aji, George Teodoro and Fusheng Wang: A MapReduce Based High Performance Whole Slide Image Analysis Framework in the Cloud. In Proceedings of the Second International Workshop on Data Management and Analytics for Medicine and Healthcare (DMAH 2016). New Delhi, September 9, 2016.
  • Cong Xie, Wen Zhong, Jun Kong, Wei Xu, Klaus Mueller and Fusheng Wang: IEVQ: An Iterative Example-based Visual Query for Pathology Database. In Proceedings of the Second International Workshop on Data Management and Analytics for Medicine and Healthcare (DMAH 2016). New Delhi, September 9, 2016.
  • Jun Kong, Pengyue Zhang, Yanhui Liang, George Teodorou, Daniel J. Brat and Fusheng Wang: Robust Cell Segmentation for Histological Images of Glioblastoma. Oral Presentation. In Proceedings of International Symposium on Biomedical Imaging (ISBI 2016), April 13-16, 2016, Prague, Czech.
  • Chunjie Zhoua, Pengfei Dai, Fusheng Wang and Zhenxing Zhang: Predicting the Passenger Demand on Bus Services for Mobile Users. Pervasive and Mobile Computing. Vol. 25, January 2016, Pages 48–66.
  • Jun Kong,Pengyue Zhang, Yanhui Liang, George Teodorou, Daniel J. Brat and Fusheng Wang: Robust Cell Segmentation for Histological Images of Glioblastoma. Oral Presentation. To Appear in Proceedings of International Symposium on Biomedical Imaging (ISBI 2016), April 13-16, Prague, Czech Republic.
  • Chunjie Zhoua, Pengfei Dai, Fusheng Wang, Zhenxing Zhanga: Predicting the Passenger Demand on Bus Services for Mobile Users. Pervasive and Mobile Computing. Vol. 25, January 2016, Pages 48–66.

2015

  • David J Foran, Tahsin Kurc, Xin Qi, Daihou Wang, Fusheng Wang, George Teodoro, Lee Cooper, Michael Nalisnik, Lin Yang and Joel Saltz: Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies. BMC Bioinformatics, Vol 16(1), 2015.
  • Shuai Zheng, Raymund Dantes, Sheri C. Tejedor, James J. Lu, Michele Beckman, Asha Krishnaswamy, Lisa Richardson and Fusheng Wang: Improved Identification of Venous Thromboembolism from Electronic Medical Records using Information Extraction. In Proceedings of AMIA 2015 Annual Symposium. San Francisco, CA, Nov 14-18, 2015.
  • Furqan Baig, Mudit Mehrotra, Hoang Vo, Fusheng Wang, Joel Saltz, Tahsin Kurc: SparkGIS: Efficient Comparison and Evaluation of Algorithm Results in Tissue Image Analysis Studies. In Proceedings of the First International Workshop on Data Management and Analytics for Medicine and Healthcare. Waikoloa, Hawaii, September 4, 2015.
  • Yanhui Liang, Jun Kong, Yangyang Zhu and Fusheng Wang: Three-Dimensional Data Analytics for Pathology Imaging. In Proceedings of the First International Workshop on Data Management and Analytics for Medicine and Healthcare. Waikoloa, Hawaii, September 4, 2015.
  • Yanhui Liang, Jun Kong, Yangyang Zhu and Fusheng Wang: Three-Dimensional Data Analytics for Pathology Imaging. In Proceedings of the First International Workshop on Data Management and Analytics for Medicine and Healthcare (DMAH 2015). Waikoloa, Hawaii, September 4, 2015.
  • Shuai Zheng, James Lu, Christina Appin, Daniel Brat, Fusheng Wang: Support Patient Search for Pathology Reports with Interactive Online Learning Based Data Extraction. Journal of Pathology Informatics, Vol 6(1), January 2015.
  • Yanhui Liang, Fusheng Wang, Darren Treanor, Derek Magee, George Teodoro, Yangyang Zhu and Jun Kong: Whole-Slide Histological Image Analysis for 3D Primary Vessel Reconstruction. In Proc. of the 18th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2015). Munich, Germany, October 5-9, 2015.
  • Xin Chen, Yu Wang, Eugene Agichtein and Fusheng Wang: A comparative study of demographic inference in Twitter. In Proc. of the 9th International AAAI Conference on Web and Social Media (ICWSM 2015). Oxford, UK, May 26-29, 2015.
  • Hoang Vo and Fusheng Wang: Effective Temporal Modeling for Scalable Spatio-Temporal Queries. In Proc. of the International Symposium on Spatiotemporal Computing (IWSC'2015). Fairfax, Virginia, July 13-15, 2015.
  • Yanhui Liang, Fusheng Wang, Darren Treanor, Derek Magee, George Teodoro, Yangyang Zhu and Jun Kong: Liver Whole Slide Image Analysis for 3D Vessel Reconstruction. In Proc. of the 12th IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2015). Brooklyn, New York, USA, April 16-19, 2015.
  • Jun Kong, Fusheng Wang, George Teodoro, Yanhui Liang, Yangyang Zhu, Carol Tucker-Burden, Daniel Brat: Automated Cell Segmentation with 3D Fluorescence Microscopy Images. In Proc. of the 12th IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2015). Brooklyn, New York, USA, April 16-19, 2015.
  • Chunjie Zhou, Pengfei Dai and Fusheng Wang: Mining Spatial and Temporal Movement Patterns of Passengers on Bus Networks. In Proc. of the Seventh International Conference on Advanced Geographic Information Systems, Applications, and Services (GEOProcessing 2015). February 22 - 27, 2015 - Lisbon, Portugal.

2014

  • Yanhui Liang, Fusheng Wang, Darren Treanor, Derek Magee, George Teodoro, Yangyang Zhu, Jun Kong: A Framework for 3D Vessel Analysis with Whole Slide Images of Serial Liver Sections. In Proc. of International Conference on Intelligent Biology and Medicine (ICIBM 2014), December 4-6, 2014, San Antonio, TX, USA.
  • Xin Chen, Hoang Vo, Ablimit Aji and Fusheng Wang: High Performance Integrated Spatial Big Data Analytics. In Proc. of the Third ACM SIGSPATIAL International Workshop on Analytics for Big Geospatial Data (BigSpatial-2014), Nov 4, 2014, Dallas, TX, USA.
  • Ablimit Aji, George Teodoro and Fusheng Wang: Haggis: Turbo Charge A MapReduce based Spatial Data Warehousing System with GPU Engine. In Proc. of the Third ACM SIGSPATIAL International Workshop on Analytics for Big Geospatial Data (BigSpatial-2014), Nov 4, 2014, Dallas, TX, USA.
  • Hoang Vo, Ablimit Aji, George Teodoro and Fusheng Wang: SATO: A Spatial Data Partitioning Framework for Scalable Query Processing. In Proc. of the 22nd ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems (ACM SIGSPATIAL 2014), Dallas, Texas in November 4-7, 2014, Dallas, TX, USA.
  • Shuai Zheng, Fusheng Wang and James Lu: Enabling Ontology Based Semantic Queries in Biomedical Database Systems.International Journal of Semantic Computing (IJSC). Vol 8(1), 2014.
  • Fusheng Wang, Cristobal Vergara-Niedermayr, Peiya Liu: Metadata Based Management and Sharing of Distributed Biomedical Data.International Journal of Metadata, Semantics and Ontologies (IJMSO), Special Issue on “Metadata for e-Science and e-Research”. Vol 9 (1), 2014.

2013

2012

2011

2009 and before