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 ===== Publications ===== ===== Publications =====
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 ==== Dr. Wang's Bibliography links ==== ==== Dr. Wang's Bibliography links ====
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   * [[http://​scholar.google.com/​citations?​user=VB6tZFEAAAAJ|Google Scholar]]   * [[http://​scholar.google.com/​citations?​user=VB6tZFEAAAAJ|Google Scholar]]
   * [[http://​www.informatik.uni-trier.de/​~ley/​pers/​hd/​w/​Wang:​Fusheng.html|DBLP]]   * [[http://​www.informatik.uni-trier.de/​~ley/​pers/​hd/​w/​Wang:​Fusheng.html|DBLP]]
-  * [[http://​www.ncbi.nlm.nih.gov/​pubmed?​term=Wang%2C%20Fusheng%5BAuthor%20-%20Full%5D|PubMed]]+  * [[http://​www.ncbi.nlm.nih.gov/​pubmed?​term=Wang, Fusheng[Author ​Full]|PubMed]]
  
-==== 2017 ====+==== 2019 ==== 
 +  * Xinyu Dong, Sina Rashidian, Yu Wang, Janos Hajagos, Mary Saltz, Joel Saltz and Fusheng Wang: Machine Learning Based Opioid Overdose Prediction Using Electronic Health Records. To appear in AMIA Annual Symposium 2019, November 16-20, Washington DC, USA.  
 +  * Elinor Schoenfeld, George Leibowitz, Yu Wang, Xin Chen, Wei Hou, Sina Rashidian, Mary M Saltz, Joel H Saltz, and Fusheng Wang: Geographic, temporal and sociodemographic differences in opioid poisoning. American Journal of Preventive Medicine. Accepted.  
 +  * Furqan Baig and Fusheng Wang: Blockchain Enabled Distributed Data Management: a Vision. In Proceedings of the First International Workshop on Blockchain and Data Management (Co-located with ICDE 2019). Apr 8, 2019, Macau SAR, China.  
 +  * Pengyue Zhang, Fusheng Wang, George Teodoro, Yanhui Liang, Mousumi Roy, Daniel Brat and Jun Kong: Effective nuclei segmentation with sparse shape prior and dynamic occlusion constraint for glioblastoma pathology images. Journal of Medical Imaging. 6(1), 017502 (2019).  
 +  * Xiaoyuan Guo, Fusheng Wang, George Teodoro, Alton Farris and Jun Kong: Liver Steatosis Segmentation with Deep Learning Methods. In Proceedings of IEEE International Symposium on Biomedical Imaging (ISBI) , pp. 24-27. Venice, Italy, April 8 - 11, 2019.  
 +  * Sina Rashidian, Janos Hajagos, Richard A. Moffitt, Fusheng Wang, Xinyu Dong, Kayley Abell-Hart, Kimberly M. Noel, Rajarsi R. Gupta, Mathew A. Tharakan, Joel H. Saltz, Mary M. Saltz: Deep Learning on Electronic Health Records to Improve Disease Coding Accuracy. In Proceedings of AMIA 2019 Informatics Summit. March 25-28, 2019, San Francisco, California, USA.  
 +  * Hoang Vo, Jun Kong, Dejun Teng, Yanhui Liang, Ablimit Aji, George Teodoro and Fusheng Wang: MaReIA: A Cloud MapReduce Based High Performance Whole Slide Image Analysis Framework. Distributed and Parallel Databases. Special Issue on Data Management and Analytics for Healthcare. Volume 37 Issue 2, June 2019. Pages 251-272.  
 +  * Dejun Teng, Jun Kong and Fusheng Wang: Scalable and Flexible Management of Medical Image Big Data. Distributed and Parallel Databases. June 2019, Volume 37, Issue 2, pp 235–250. 
 +  * Daniel Kim, Wei Hou, Fusheng Wang and Chrisa Arcan: Factors Affecting Obesity and Waist Circumference Among US Adults. Preventing Chronic Disease. Vol 16, 2019. 
  
-XSunWPittardTXuTianlei, M. ZwickXJiangF. Wang, and ZQinOmicSeqA web-based search engine ​for exploring omics datasetsNucleic Acids Research, In Press+==== 2018 ==== 
 +  * Sina Rashidian, Janos Hajagos, Richard AMoffittFusheng Wang, Xinyu Dong, Kayley Abell-Hart, Kimberly MNoelRajarsi RGuptaMathew A. Tharakan, Joel H. SaltzMary M. Saltz: Disease phenotyping using deep learning: A diabetes case study. In Proceedings of NIPS 2018 Workshop on Machine Learning for Health (NIPS ML4H 2018). December 82018, Montreal, Canada. 
 +  * Chao GaoFurqan Baig, Hoang Vo, Yangyang Zhu and Fusheng Wang: Accelerating Cross-Matching Operations of Geospatial Datasets using a CPU/GPU Hybrid PlatformIn Proceedings of the 3rd International Workshop on Big Spatial Data (in conjunction with IEEE Big Data 2018). December 10-13, 2018, Seattle, Washington, USA. (Best paper award.)  
 +  * Daniel Kim, Fusheng ​Wang and Chrisa Arcan: Geographic Association Between Income Inequality and Obesity Among Adults in New York State. Preventing Chronic Disease. Vol 15:1802172018. 
 +  * Sina Rashidian, Xinyu Dong, Shubham Kumar Jain and Fusheng Wang: EaserGeocoder:​ Integrative Geocoding with Machine LearningDemo Paper. In Proceedings of ACM SIGSPATIAL 2018, November 6 - 9, 2018. Seattle, Washington, USA.  
 +  * Sheetal Mangesh Pandrekar, Xin Chen and Fusheng WangSocial Media Based Analysis of Opioid Epidemic Using Reddit. In Proceedings of AMIA 2018 Annual Symposium. San Francisco, November 3-7, 2018.  
 +  * Pengyue Zhang, Fusheng Wang, Wei Xu, and Yulee LiMulti-channel Generative Adversarial Network ​for Parallel Magnetic Resonance Image Reconstruction in K-spaceIn Proceedings of the 21st International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2018). September 16th to 20th2018, Granada, Spain.  
 +  * Pengyue Zhang, Fusheng Wang, Yefeng Zheng: Deep Reinforcement Learning for Vessel Centerline Tracing in Multi-modality 3D Volumes. ​In Proceedings of the 21st International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2018). September 16th to 20th, 2018, Granada, Spain.  
 +  * Yanhui Liang, Hoang Vo, Jun Kong and Fusheng Wang: iSPEED: a Scalable and Distributed In-Memory Based Spatial Query System for Large and Structurally Complex 3D Data. Demo Paper. In Proceedings of the 44th International Conference on Very Large Data Bases (VLDB 2018), August 27-31, 2018, Rio de Janeiro, Brazil.  
 +  * Raymund B. Dantes, Shuai Zheng, James J. Lu, Michele G. Beckman,​Asha Krishnaswamy,​Lisa C. Richardson, Sheri Chernetsky-Tejedor,​ and Fusheng Wang: Improved Identification of Venous Thromboembolism from Electronic Medical Records using a Novel Information Extraction Software Platform. Medical Care. Volume 56, Issue 9 - p e54–e60. September 2018.  
 +  * Mousumi Roy, Fusheng Wang, George Teodoro, Vos Miriam, Alton Farris and Jun Kong: Segmentation of Overlapped Steatosis in Whole-Slide Liver Histopathology Microscopy Images. In Proceedings of 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Honolulu, HI, USA, July 17-21, 2018.  
 +  * Mousumi Roy, Fusheng Wang, George Teodoro, José E. Velázquez Vega, Daniel Brat and Jun Kong: Analysis of Cellular Feature Differences of Astrocytomas with Distinct Mutational Profiles Using Digitized Histopathology Images. I Proceedings of 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Honolulu, HI, USA, July 17-21, 2018.  
 +  * Yu Wang, Wei Hou and Fusheng Wang: Mining Co-occurrence and Sequence Patterns from Cancer Diagnoses in New York State. PLOS One. 13(4):​e0194407. 2018.  
 +  * Xiaobo Sun, Jingjing Gao, Peng Jin, Fusheng Wang*, Zhaohui Qin*: Optimized Distributed Systems Achieve Significant Performance Improvement on Sorted Merging of Massive VCF Files. GigaScience. Volume 7, Issue 6, 1 June 2018. (* these authors contributed equally) 
 +  * Shuai Zheng, Salma K. Jabbour, Shannon O’Reiley, James Lu, Lihua Dong, Lijuan Ding, Ying Xiao, Ning J. Yue, Fusheng Wang*, Wei Zou*: Automated Information Extraction on Treatment and Prognosis for Non-Small Cell Lung Cancer Radiotherapy Patients. Journal of Medical Internet Research - Medical Informatics. Vol 6, No 1 (2018)(* these authors contributed equally) ​
  
-Shuai Zheng, James J Lu, Nima Ghasemzadeh,​ Arshed Ali Quyyumi and Fusheng Wang: An Effective Information Extraction Framework for Heterogeneous Clinical Reports Using Online Machine Learning and Controlled Vocabularies. JMIR Medical Informatics,​ In Press.  +==== 2017 ==== 
- +  * Furqan Baig, Hoang Vo, Tahsin Kurc, Joel Saltz and Fusheng Wang: SparkGIS: Resource Aware Efficient In-Memory Spatial Query Processing. In Proceedings of SIGSPATIAL 2017. November 7 - 10, 2017, Redondo Beach, California, USA.  
-Pengyue Zhang, Fusheng Wang, George Teodoro, Yanhui Liang, Daniel Brat and Jun Kong: Automated Level Set Segmentation of Histopathologic Cells with Sparse Shape Prior Support and Dynamic Occlusion Constraint. To Appear in Proc. of 2017 IEEE International Symposium on Biomedical Imaging, April 18 - 21, 2017, Melbourne, Australia. ​+  * Sina Rashidian, Xinyu Dong, Amogh Avadhani, Prachi Poddar and Fusheng Wang: Effective Scalable and Integrative Geocoding for Massive Address Datasets in Public Health Studies. In Proceedings of SIGSPATIAL 2017. November 7 - 10, 2017, Redondo Beach, California, USA.  
 +  * Yanhui Liang, Hoang Vo, Jun Kong and Fusheng Wang: iSPEED: an Efficient In-Memory Based Spatial Query System for Large-Scale 3D Data with Complex Structures. In Proceedings of SIGSPATIAL 2017. November 7 - 10, 2017, Redondo Beach, California, USA.  
 +  * Xiaobo Sun, Fusheng Wang and Zhaohui Qin: High Performance Merging of Massive Data from Genome-Wide Association Studies. In Proceedings of the Third VLDB Workshop on Data Management and Analytics on Healthcare and Medicine (DMAH 2017), September 1, 2017, Munich, Germany.  
 +  * Yu Wang and Fusheng Wang: Association Rule Learning and Frequent Sequence Mining of Cancer Diagnoses in New York State. In Proceedings of the Third VLDB Workshop on Data Management and Analytics on Healthcare and Medicine (DMAH 2017), September 1, 2017, Munich, Germany.  
 +  * Alevtina Dubovitskaya,​ Zhigang Xu, Samuel Ryu, Michael Ignaz Schumacher and Fusheng Wang: How Blockchain could Empower eHealth: an Application for Radiation Oncology. In Proceedings of the Third VLDB Workshop on Data Management and Analytics on Healthcare and Medicine (DMAH 2017), September 1, 2017, Munich, Germany.  
 +  * Xin Chen, Yu Wang, Xiaxia Yu and Fusheng Wang: Large Scale Analysis of Opioid Poisoning Related Hospital Visits in New York State. In AMIA Annual Symposium, November 4-8, 2017, Wasington DC, USA.  
 +  * Alevtina Dubovitskaya,​ Zhigang Xu, Samuel Ryu, Michael Schumacher and Fusheng Wang: Secure and Trustable Electronic Medical Records Sharing using Blockchain. In AMIA Annual Symposium, November 4-8, 2017, Wasington DC, USA.  
 +  * Sheetal Mangesh Pandrekar, Manish Valakonda, Xin Chen and Fusheng Wang: Towards Spatial Analysis of Opioid Abuse Using Twitter. Poster Paper. In AMIA Annual Symposium, November 4-8, 2017, Wasington DC, USA.  
 +  * S. K. Prasad, D. Aghajarian, Mi. McDermott, D. Shah, M. Mokbel, S. Puri, S. J. Rey, S. Shekhar, Y. Xe, R. R. Vatsavai, F. Wang, Y. Liang, H. Vo and S. Wang: Parallel Processing over Spatial-Temporal Datasets from Geo, Bio, Climate and Social Science Communities:​ A Research Roadmap. In Proceedings of IEEE BigData Congress. June 25 - June 30, 2017, Honolulu, Hawaii, USA. 
 +  * Shuai Zheng, James J Lu, Nima Ghasemzadeh,​ Arshed Ali Quyyumi and Fusheng Wang: An Effective Information Extraction Framework for Heterogeneous Clinical Reports Using Online Machine Learning and Controlled Vocabularies. ​Vol 5, No 2 (2017). Journal of Medical Internet Research (JMIR) - Medical Informatics.  
 +  * Pengyue Zhang, Fusheng Wang, George Teodoro, Yanhui Liang, Daniel Brat and Jun Kong: Automated Level Set Segmentation of Histopathologic Cells with Sparse Shape Prior Support and Dynamic Occlusion Constraint. In Proc. of 2017 IEEE International Symposium on Biomedical Imaging, April 18 - 21, 2017, Melbourne, Australia.  
 +  * X. Sun, W. Pittard, T. Xu, Tianlei, M. Zwick, X. Jiang, F. Wang, and Z. Qin: OmicSeq: A web-based search engine for exploring omics datasets. Nucleic Acids Research, In Press. 
 +  * Shuai Zheng, James J Lu, Nima Ghasemzadeh,​ Arshed Ali Quyyumi and Fusheng Wang: An Effective Information Extraction Framework for Heterogeneous Clinical Reports Using Online Machine Learning and Controlled Vocabularies. JMIR Medical Informatics,​ In Press. 
 +  ​* ​Pengyue Zhang, Fusheng Wang, George Teodoro, Yanhui Liang, Daniel Brat and Jun Kong: Automated Level Set Segmentation of Histopathologic Cells with Sparse Shape Prior Support and Dynamic Occlusion Constraint. To Appear in Proc. of 2017 IEEE International Symposium on Biomedical Imaging, April 18 - 21, 2017, Melbourne, Australia
 +  * Pengyue Zhang, Fusheng Wang and Yefeng Zheng: Self supervised deep representation learning for fine-grained body part recognition. To Appear in Proc. of 2017 IEEE International Symposium on Biomedical Imaging, April 18 - 21, 2017, Melbourne, Australia. 
 +  * Blair Rossetti, Fusheng Wang, Pengyue Zhang, George Teodoro, Daniel Brat and Jun Kong: Dynamic Registration for Gigapixel Serial Whole Slide Images. To Appear in Proc. of 2017 IEEE International Symposium on Biomedical Imaging, April 18 - 21, 2017, Melbourne, Australia. 
 +  * Xin Chen, Yu Wang, Elinor Schoenfeld, Mary Saltz, Joel Saltz and Fusheng Wang: Spatio-temporal Analysis for New York State SPARCS Data. To Appear in Proc. of 2017 AMIA Joint Summits on Translational Science, March 27 - 30, 2017, San Francisco,​CA,​ USA. 
 +  * Yanhui Liang, Fusheng Wang, Pengyue Zhang, Daniel J. Brat, Joel Saltz, Jun Kong: Development of a Framework for Large Scale Three-Dimensional Pathology and Biomarker Imaging and Spatial Analytics. To Appear in Proc. of 2017 AMIA Joint Summits on Translational Science, March 27 - 30, 2017, San Francisco, CA, USA. 
 +  * Naiyun Zhou, Xiaxia Yu, Tianhao Zhao, Si Wen, Fusheng Wang, Wei Zhu, Tahsin Kurc, Allen Tannenbaum, Joel Saltz and Yi Gao: Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis. In Proc. of 2017 SPIE Medical Imaging, February 11, 2017, Orlando, Florida, United States.
  
-Pengyue Zhang, Fusheng Wang and Yefeng Zheng: Self supervised deep representation learning for fine-grained body part recognition. To Appear in Proc. of 2017 IEEE International Symposium on Biomedical Imaging, April 18 - 21, 2017, Melbourne, Australia. ​+==== 2016 ====
  
-Blair Rossetti, Fusheng Wang, Pengyue Zhang, George Teodoro, Daniel Brat and Jun Kong: Dynamic Registration for Gigapixel Serial Whole Slide Images. To Appear in Proc. of 2017 IEEE International Symposium on Biomedical Imaging, April 18 - 21, 2017, Melbourne, Australia. 
- 
-Xin Chen, Yu Wang, Elinor Schoenfeld, Mary Saltz, Joel Saltz and Fusheng Wang: Spatio-temporal Analysis for New York State SPARCS Data. To Appear in Proc. of 2017 AMIA Joint Summits on Translational Science, March 27 - 30, 2017, San Francisco,​CA,​ USA.  
- 
-Yanhui Liang, Fusheng Wang, Pengyue Zhang, Daniel J. Brat, Joel Saltz, Jun Kong: Development of a Framework for Large Scale Three-Dimensional Pathology and Biomarker Imaging and Spatial Analytics. To Appear in Proc. of 2017 AMIA Joint Summits on Translational Science, March 27 - 30, 2017, San Francisco,​CA,​ USA.  
- 
-Naiyun Zhou, Xiaxia Yu, Tianhao Zhao, Si Wen, Fusheng Wang, Wei Zhu, Tahsin Kurc, Allen Tannenbaum, Joel Saltz and Yi Gao: Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis. In Proc. of 2017 SPIE Medical Imaging, February 11, 2017, Orlando, Florida, United States. ​ 
- 
-==== 2016 ==== 
   * Xin Chen and Fusheng Wang: Integrative Spatial Data Analytics for Public Health Studies of New York State. To Appear in Proceedings of AMIA 2016 Annual Symposium. Chicago, IL, Nov 12-16, 2016.   * Xin Chen and Fusheng Wang: Integrative Spatial Data Analytics for Public Health Studies of New York State. To Appear in Proceedings of AMIA 2016 Annual Symposium. Chicago, IL, Nov 12-16, 2016.
-  * Yanhui Liang, Hoang Vo, Ablimit Aji, Jun Kong and Fusheng Wang: [[http://​dl.acm.org/​citation.cfm?​id=2996925|Scalable 3D Spatial Queries for Analytical Pathology Imaging with MapReduce]]. Poster Paper. In Proc. of the 24nd ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems (ACM SIGSPATIAL 2016), October 31 to November 3, 2016, San Francisco Bay Area, California, USA.  +  * Yanhui Liang, Hoang Vo, Ablimit Aji, Jun Kong and Fusheng Wang: [[http://​dl.acm.org/​citation.cfm?​id=2996925|Scalable 3D Spatial Queries for Analytical Pathology Imaging with MapReduce]]. Poster Paper. In Proc. of the 24nd ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems (ACM SIGSPATIAL 2016), October 31 to November 3, 2016, San Francisco Bay Area, California, USA. 
-  * Xin Chen, Hoang Vo, and Fusheng Wang: Annotating Geographical Objects in OpenStreetMap with Geo-tagged Social Media. In Proc. of the 9th ACM SIGSPATIAL International Workshop on Location-Based Social Networks (LBSN 2016), October 31, 2016, San Francisco Bay Area, California, USA.  +  * Xin Chen, Hoang Vo, and Fusheng Wang: Annotating Geographical Objects in OpenStreetMap with Geo-tagged Social Media. In Proc. of the 9th ACM SIGSPATIAL International Workshop on Location-Based Social Networks (LBSN 2016), October 31, 2016, San Francisco Bay Area, California, USA. 
-  * Hoang Vo, Jun Kong, Dejun Teng, Yanhui Liang, Ablimit Aji, George Teodoro and Fusheng Wang: A MapReduce Based High Performance Whole Slide Image Analysis Framework in the Cloud. In Proceedings of the Second International Workshop on Data Management and Analytics for Medicine and Healthcare (DMAH 2016). New Delhi, September 9, 2016.  +  * Hoang Vo, Jun Kong, Dejun Teng, Yanhui Liang, Ablimit Aji, George Teodoro and Fusheng Wang: A MapReduce Based High Performance Whole Slide Image Analysis Framework in the Cloud. In Proceedings of the Second International Workshop on Data Management and Analytics for Medicine and Healthcare (DMAH 2016). New Delhi, September 9, 2016. 
-  * Cong Xie, Wen Zhong, Jun Kong, Wei Xu, Klaus Mueller and Fusheng Wang: IEVQ: An Iterative Example-based Visual Query for Pathology Database. In Proceedings of the Second International Workshop on Data Management and Analytics for Medicine and Healthcare (DMAH 2016). New Delhi, September 9, 2016.  +  * Cong Xie, Wen Zhong, Jun Kong, Wei Xu, Klaus Mueller and Fusheng Wang: IEVQ: An Iterative Example-based Visual Query for Pathology Database. In Proceedings of the Second International Workshop on Data Management and Analytics for Medicine and Healthcare (DMAH 2016). New Delhi, September 9, 2016. 
-  * Jun Kong, Pengyue Zhang, Yanhui Liang, George Teodorou, Daniel J. Brat and Fusheng Wang: Robust Cell Segmentation for Histological Images of Glioblastoma. Oral Presentation. In Proceedings of International Symposium on Biomedical Imaging (ISBI 2016), April 13-16, 2016, Prague, Czech. ​+  * Jun Kong, Pengyue Zhang, Yanhui Liang, George Teodorou, Daniel J. Brat and Fusheng Wang: Robust Cell Segmentation for Histological Images of Glioblastoma. Oral Presentation. In Proceedings of International Symposium on Biomedical Imaging (ISBI 2016), April 13-16, 2016, Prague, Czech.
   * Chunjie Zhoua, Pengfei Dai, Fusheng Wang and Zhenxing Zhang: Predicting the Passenger Demand on Bus Services for Mobile Users. Pervasive and Mobile Computing. Vol. 25, January 2016, Pages 48–66.   * Chunjie Zhoua, Pengfei Dai, Fusheng Wang and Zhenxing Zhang: Predicting the Passenger Demand on Bus Services for Mobile Users. Pervasive and Mobile Computing. Vol. 25, January 2016, Pages 48–66.
-  * Jun Kong,​Pengyue Zhang, Yanhui Liang, George Teodorou, Daniel J. Brat and Fusheng Wang: //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications.html|Robust Cell Segmentation for Histological Images of Glioblastoma.]] // Oral Presentation. To Appear in Proceedings of International Symposium on Biomedical Imaging (ISBI 2016), April 13-16, Prague, Czech Republic. ​+  * Jun Kong,​Pengyue Zhang, Yanhui Liang, George Teodorou, Daniel J. Brat and Fusheng Wang: //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications.html|Robust Cell Segmentation for Histological Images of Glioblastoma.]] // Oral Presentation. To Appear in Proceedings of International Symposium on Biomedical Imaging (ISBI 2016), April 13-16, Prague, Czech Republic.
   * Chunjie Zhoua, Pengfei Dai, Fusheng Wang, Zhenxing Zhanga: //​[[http://​www.sciencedirect.com/​science/​article/​pii/​S157411921500187X|Predicting the Passenger Demand on Bus Services for Mobile Users.]]// Pervasive and Mobile Computing. Vol. 25, January 2016, Pages 48–66.   * Chunjie Zhoua, Pengfei Dai, Fusheng Wang, Zhenxing Zhanga: //​[[http://​www.sciencedirect.com/​science/​article/​pii/​S157411921500187X|Predicting the Passenger Demand on Bus Services for Mobile Users.]]// Pervasive and Mobile Computing. Vol. 25, January 2016, Pages 48–66.
-  * David J Foran Tahsin Kurc, Xin Qi, Daihou Wang, Fusheng Wang, George Teodoro, Lee Cooper, Michael Nalisnik, Lin Yang, Joel Saltz: //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications.html|Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies.]]//​ BMC Bioinformatics,​ Vol 16(1), 2015. 
-  * Shuai Zheng, Raymund Dantes, Sheri C. Tejedor, James J. Lu, Michele Beckman, Asha Krishnaswamy,​ Lisa Richardson, Fusheng Wang: //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications.html|Improved Identification of Venous Thromboembolism from Electronic Medical Records using Information Extraction. ]]// To Appear in Proceedings of AMIA 2015 Annual Symposium. San Francisco, CA, Nov 14-18, 2015. \\ 
-  * Yanhui Liang, Jun Kong, Yangyang Zhu and Fusheng Wang: //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications.html|Three-Dimensional Data Analytics for Pathology Imaging. ]]// In Proceedings of the First International Workshop on Data Management and Analytics for Medicine and Healthcare. Waikoloa, Hawaii, September 4, 2015. 
-  * Shuai Zheng, James Lu, Christina Appin, Daniel Brat, Fusheng Wang: //​[[http://​www.jpathinformatics.org/​text.asp?​2015/​6/​1/​51/​166012|Support Patient Search for Pathology Reports with Interactive Online Learning Based Data Extraction.]]//​ Vol 6(1), January 2015. Journal of Pathology Informatics. 
-  * Yanhui Liang, Fusheng Wang, Darren Treanor, Derek Magee, George Teodoro, Yangyang Zhu and Jun Kong: //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications.html|Whole-Slide Histological Image Analysis for 3D Primary Vessel Reconstruction. ]]// In Proc. of [[http://​www.stcenter.net/​istworkshop/​|the 18th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2015)]]. Munich, Germany, October 5-9, 2015. 
-  * Xin Chen, Yu Wang, Eugene Agichtein and Fusheng Wang: //​[[http://​www.aaai.org/​ocs/​index.php/​ICWSM/​ICWSM15/​paper/​view/​10541|A comparative study of demographic inference in Twitter. ]]// In Proc. of the 9th International AAAI Conference on Web and Social Media (ICWSM 2015). Oxford, UK, May 26-29, 2015. 
-  * Hoang Vo and Fusheng Wang: //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications.html|Effective Temporal Modeling for Scalable Spatio-Temporal Queries. ]]// In Proc. of [[http://​stcenter.net/​issc/​|the International Symposium on Spatiotemporal Computing(IWSC'​2015)]]. Fairfax, Virginia, July 13-15th, 2015. \\ 
-  * Yanhui Liang, Fusheng Wang, Darren Treanor, Derek Magee, George Teodoro, Yangyang Zhu and Jun Kong: //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications.html|Liver Whole Slide Image Analysis for 3D Vessel Reconstruction. ]]// In Proc. of the 12th IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2015). Brooklyn, New York, USA, April 16-19, 2015. 
-  * Jun Kong, Fusheng Wang, George Teodoro, Yanhui Liang, Yangyang Zhu, Carol Tucker-Burden,​ Daniel Brat: //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications.html|Automated Cell Segmentation with 3D Fluorescence Microscopy Images. ]]// In Proc. of the 12th IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2015). Brooklyn, New York, USA, April 16-19, 2015 
-  * Chunjie Zhou, Pengfei Dai, Fusheng Wang and Renpu Li: //​[[http://​www.ns2.thinkmind.org/​download.php?​articleid=geoprocessing_2015_5_40_30132|Mining Spatial and Temporal Movement Patterns of Passengers on Bus Networks. ]]// In Proc. of the Seventh International Conference on Advanced Geographic Information Systems, Applications,​ and Services (GEOProcessing 2015). February 22 - 27, 2015 - Lisbon, Portugal. 
-  * Fusheng Wang, Ablimit Aji, and George Teodoro: //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications.html|Medical Image Dataset Processing over Cloud/​MapReduce with Heterogeneous Architectures. ]]// [[http://​www.springer.com/​computer/​database+management+&​+information+retrieval/​book/​978-0-387-30858-6|Encyclopedia of GIS]]. Springer. Forthcoming. \\  * Fusheng Wang, Ablimit Aji and George Teodoro: //​[[http://​dl.acm.org/​citation.cfm?​id=2766199|High Performance Spatial Queries for Spatial Big Data: from Medical Imaging to GIS. ]]// ACM SIGSPATIAL Special, Vol 6(3), November, 2014. 
-  * Yanhui Liang, Fusheng Wang, Darren Treanor, Derek Magee, George Teodoro, Yangyang Zhu, Jun Kong: //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications.html|A Framework for 3D Vessel Analysis with Whole Slide Images of Serial Liver Sections.]]//​ In Proc. of [[http://​compgenomics.utsa.edu/​icibm2014/​|International Conference on Intelligent Biology and Medicine (ICIBM 2014)]], December 4-6, 2014, San Antonio, TX, USA. 
-  * Xin Chen, Hoang Vo, Ablimit Aji and Fusheng Wang: //​[[http://​dl.acm.org/​citation.cfm?​id=2676538|High Performance Integrated Spatial Big Data Analytics.]]//​ In Proc. of the Third ACM SIGSPATIAL International Workshop on Analytics for Big Geospatial Data (BigSpatial-2014),​ Nov 4, 2014, Dallas, TX, USA. 
-  * Ablimit Aji, George Teodoro and Fusheng Wang: //​[[http://​dl.acm.org/​citation.cfm?​id=2676539|Haggis:​ Turbo Charge A MapReduce based Spatial Data Warehousing System with GPU Engine.]]// In Proc. of the Third ACM SIGSPATIAL International Workshop on Analytics for Big Geospatial Data (BigSpatial-2014),​ Nov 4, 2014, Dallas, TX, USA. 
-  * Ablimit Aji, George Teodoro and Fusheng Wang: //​[[https://​sites.google.com/​site/​hadoopgis/​SATOTechReport2014.pdf|SATO:​ A Spatial Data Partitioning Framework for Scalable Query Processing.]]//​ In Proc. of [[http://​sigspatial2014.sigspatial.org|the 22nd ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems (ACM SIGSPATIAL 2014)]], Dallas, Texas in November 4-7, 2014, Dallas, TX, USA. 
-  * Ablimit Aji, Hoang Vo and Fusheng Wang: //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications.html|Spatial Queries in the Cloud.]]// [[http://​www.springer.com/​computer/​database+management+&​+information+retrieval/​book/​978-0-387-35544-3|Encyclopedia of Database Systems]] (edited by Ling Liu and M. Tamer Özsu). Forthcoming. 
-  * Shuai Zheng, Fusheng Wang and James Lu: //​[[http://​www.ncbi.nlm.nih.gov/​pubmed/​25541585|Enabling Ontology Based Semantic Queries in Biomedical Database Systems]].//​ International Journal of Semantic Computing (IJSC). Vol 8(1), 2014. [[http://​www3.cs.stonybrook.edu/​~fuswang/​papers/​DBOntoLinkTechReport2014.pdf|Technique Report]]. 
-  * Fusheng Wang, Cristobal Vergara-Niedermayr,​ Peiya Liu: //​[[http://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC4019237/​|Metadata Based Management and Sharing of Distributed Biomedical Data.]]// International Journal of Metadata, Semantics and Ontologies (IJMSO), Special Issue on "​Metadata for e-Science and e-Research"​. Vol 9 (1), 2014.  
  
 ==== 2015 ==== ==== 2015 ====
-  ​* David J Foran, Tahsin Kurc, Xin Qi, Daihou Wang, Fusheng Wang, George Teodoro, Lee Cooper, Michael Nalisnik, Lin Yang and Joel Saltz: Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies. BMC Bioinformatics,​ Vol 16(1), 2015. + 
 +  ​* David J Foran, Tahsin Kurc, Xin Qi, Daihou Wang, Fusheng Wang, George Teodoro, Lee Cooper, Michael Nalisnik, Lin Yang and Joel Saltz: Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies. BMC Bioinformatics,​ Vol 16(1), 2015.
   * Shuai Zheng, Raymund Dantes, Sheri C. Tejedor, James J. Lu, Michele Beckman, Asha Krishnaswamy,​ Lisa Richardson and Fusheng Wang: Improved Identification of Venous Thromboembolism from Electronic Medical Records using Information Extraction. In Proceedings of AMIA 2015 Annual Symposium. San Francisco, CA, Nov 14-18, 2015.   * Shuai Zheng, Raymund Dantes, Sheri C. Tejedor, James J. Lu, Michele Beckman, Asha Krishnaswamy,​ Lisa Richardson and Fusheng Wang: Improved Identification of Venous Thromboembolism from Electronic Medical Records using Information Extraction. In Proceedings of AMIA 2015 Annual Symposium. San Francisco, CA, Nov 14-18, 2015.
-  * Furqan Baig, Mudit Mehrotra, Hoang Vo, Fusheng Wang, Joel Saltz, Tahsin Kurc: SparkGIS: Efficient Comparison and Evaluation of Algorithm Results in Tissue Image Analysis Studies. In Proceedings of the First International Workshop on Data Management and Analytics for Medicine and Healthcare. Waikoloa, Hawaii, September 4, 2015. +  * Furqan Baig, Mudit Mehrotra, Hoang Vo, Fusheng Wang, Joel Saltz, Tahsin Kurc: SparkGIS: Efficient Comparison and Evaluation of Algorithm Results in Tissue Image Analysis Studies. In Proceedings of the First International Workshop on Data Management and Analytics for Medicine and Healthcare. Waikoloa, Hawaii, September 4, 2015.
   * Yanhui Liang, Jun Kong, Yangyang Zhu and Fusheng Wang: Three-Dimensional Data Analytics for Pathology Imaging. In Proceedings of the First International Workshop on Data Management and Analytics for Medicine and Healthcare. Waikoloa, Hawaii, September 4, 2015.   * Yanhui Liang, Jun Kong, Yangyang Zhu and Fusheng Wang: Three-Dimensional Data Analytics for Pathology Imaging. In Proceedings of the First International Workshop on Data Management and Analytics for Medicine and Healthcare. Waikoloa, Hawaii, September 4, 2015.
-  * Yanhui Liang, Jun Kong, Yangyang Zhu and Fusheng Wang: Three-Dimensional Data Analytics for Pathology Imaging. In Proceedings of the First International Workshop on Data Management and Analytics for Medicine and Healthcare (DMAH 2015). Waikoloa, Hawaii, September 4, 2015. +  * Yanhui Liang, Jun Kong, Yangyang Zhu and Fusheng Wang: Three-Dimensional Data Analytics for Pathology Imaging. In Proceedings of the First International Workshop on Data Management and Analytics for Medicine and Healthcare (DMAH 2015). Waikoloa, Hawaii, September 4, 2015.
   * Shuai Zheng, James Lu, Christina Appin, Daniel Brat, Fusheng Wang: Support Patient Search for Pathology Reports with Interactive Online Learning Based Data Extraction. Journal of Pathology Informatics,​ Vol 6(1), January 2015.   * Shuai Zheng, James Lu, Christina Appin, Daniel Brat, Fusheng Wang: Support Patient Search for Pathology Reports with Interactive Online Learning Based Data Extraction. Journal of Pathology Informatics,​ Vol 6(1), January 2015.
-  * Yanhui Liang, Fusheng Wang, Darren Treanor, Derek Magee, George Teodoro, Yangyang Zhu and Jun Kong: Whole-Slide Histological Image Analysis for 3D Primary Vessel Reconstruction. In Proc. of the 18th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2015). Munich, Germany, October 5-9, 2015.  +  * Yanhui Liang, Fusheng Wang, Darren Treanor, Derek Magee, George Teodoro, Yangyang Zhu and Jun Kong: Whole-Slide Histological Image Analysis for 3D Primary Vessel Reconstruction. In Proc. of the 18th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2015). Munich, Germany, October 5-9, 2015. 
-  * Xin Chen, Yu Wang, Eugene Agichtein and Fusheng Wang: A comparative study of demographic inference in Twitter. In Proc. of the 9th International AAAI Conference on Web and Social Media (ICWSM 2015). Oxford, UK, May 26-29, 2015.  +  * Xin Chen, Yu Wang, Eugene Agichtein and Fusheng Wang: A comparative study of demographic inference in Twitter. In Proc. of the 9th International AAAI Conference on Web and Social Media (ICWSM 2015). Oxford, UK, May 26-29, 2015. 
-  * Hoang Vo and Fusheng Wang: Effective Temporal Modeling for Scalable Spatio-Temporal Queries. In Proc. of the International Symposium on Spatiotemporal Computing (IWSC'​2015). Fairfax, Virginia, July 13-15, 2015.  +  * Hoang Vo and Fusheng Wang: Effective Temporal Modeling for Scalable Spatio-Temporal Queries. In Proc. of the International Symposium on Spatiotemporal Computing (IWSC'​2015). Fairfax, Virginia, July 13-15, 2015. 
-  * Yanhui Liang, Fusheng Wang, Darren Treanor, Derek Magee, George Teodoro, Yangyang Zhu and Jun Kong: Liver Whole Slide Image Analysis for 3D Vessel Reconstruction. In Proc. of the 12th IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2015). Brooklyn, New York, USA, April 16-19, 2015.  +  * Yanhui Liang, Fusheng Wang, Darren Treanor, Derek Magee, George Teodoro, Yangyang Zhu and Jun Kong: Liver Whole Slide Image Analysis for 3D Vessel Reconstruction. In Proc. of the 12th IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2015). Brooklyn, New York, USA, April 16-19, 2015. 
-  * Jun Kong, Fusheng Wang, George Teodoro, Yanhui Liang, Yangyang Zhu, Carol Tucker-Burden,​ Daniel Brat: Automated Cell Segmentation with 3D Fluorescence Microscopy Images. In Proc. of the 12th IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2015). Brooklyn, New York, USA, April 16-19, 2015.  +  * Jun Kong, Fusheng Wang, George Teodoro, Yanhui Liang, Yangyang Zhu, Carol Tucker-Burden,​ Daniel Brat: Automated Cell Segmentation with 3D Fluorescence Microscopy Images. In Proc. of the 12th IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2015). Brooklyn, New York, USA, April 16-19, 2015. 
-  * Chunjie Zhou, Pengfei Dai and Fusheng Wang: Mining Spatial and Temporal Movement Patterns of Passengers on Bus Networks. In Proc. of the Seventh International Conference on Advanced Geographic Information Systems, Applications,​ and Services (GEOProcessing 2015). February 22 - 27, 2015 - Lisbon, Portugal. ​ +  * Chunjie Zhou, Pengfei Dai and Fusheng Wang: Mining Spatial and Temporal Movement Patterns of Passengers on Bus Networks. In Proc. of the Seventh International Conference on Advanced Geographic Information Systems, Applications,​ and Services (GEOProcessing 2015). February 22 - 27, 2015 - Lisbon, Portugal.
  
 ==== 2014 ==== ==== 2014 ====
-  * Yanhui Liang, Fusheng Wang, Darren Treanor, Derek Magee, George Teodoro, Yangyang Zhu, Jun Kong: A Framework for 3D Vessel Analysis with Whole Slide Images of Serial Liver Sections. In Proc. of International Conference on Intelligent Biology and Medicine (ICIBM 2014), December 4-6, 2014, San Antonio, TX, USA.  
-  * Xin Chen, Hoang Vo, Ablimit Aji and Fusheng Wang: High Performance Integrated Spatial Big Data Analytics. In Proc. of the Third ACM SIGSPATIAL International Workshop on Analytics for Big Geospatial Data (BigSpatial-2014),​ Nov 4, 2014, Dallas, TX, USA.  
-  * Ablimit Aji, George Teodoro and Fusheng Wang: Haggis: Turbo Charge A MapReduce based Spatial Data Warehousing System with GPU Engine. In Proc. of the Third ACM SIGSPATIAL International Workshop on Analytics for Big Geospatial Data (BigSpatial-2014),​ Nov 4, 2014, Dallas, TX, USA.  
-  * Hoang Vo, Ablimit Aji, George Teodoro and Fusheng Wang: SATO: A Spatial Data Partitioning Framework for Scalable Query Processing. In Proc. of the 22nd ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems (ACM SIGSPATIAL 2014), Dallas, Texas in November 4-7, 2014, Dallas, TX, USA.  
-  * Shuai Zheng, Fusheng Wang and James Lu: Enabling Ontology Based Semantic Queries in Biomedical Database Systems.International Journal of Semantic Computing (IJSC). Vol 8(1), 2014.  
-  * Fusheng Wang, Cristobal Vergara-Niedermayr,​ Peiya Liu: Metadata Based Management and Sharing of Distributed Biomedical Data.International Journal of Metadata, Semantics and Ontologies (IJMSO), Special Issue on "​Metadata for e-Science and e-Research"​. Vol 9 (1), 2014.  
  
 +  * Yanhui Liang, Fusheng Wang, Darren Treanor, Derek Magee, George Teodoro, Yangyang Zhu, Jun Kong: A Framework for 3D Vessel Analysis with Whole Slide Images of Serial Liver Sections. In Proc. of International Conference on Intelligent Biology and Medicine (ICIBM 2014), December 4-6, 2014, San Antonio, TX, USA.
 +  * Xin Chen, Hoang Vo, Ablimit Aji and Fusheng Wang: High Performance Integrated Spatial Big Data Analytics. In Proc. of the Third ACM SIGSPATIAL International Workshop on Analytics for Big Geospatial Data (BigSpatial-2014),​ Nov 4, 2014, Dallas, TX, USA.
 +  * Ablimit Aji, George Teodoro and Fusheng Wang: Haggis: Turbo Charge A MapReduce based Spatial Data Warehousing System with GPU Engine. In Proc. of the Third ACM SIGSPATIAL International Workshop on Analytics for Big Geospatial Data (BigSpatial-2014),​ Nov 4, 2014, Dallas, TX, USA.
 +  * Hoang Vo, Ablimit Aji, George Teodoro and Fusheng Wang: SATO: A Spatial Data Partitioning Framework for Scalable Query Processing. In Proc. of the 22nd ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems (ACM SIGSPATIAL 2014), Dallas, Texas in November 4-7, 2014, Dallas, TX, USA.
 +  * Shuai Zheng, Fusheng Wang and James Lu: Enabling Ontology Based Semantic Queries in Biomedical Database Systems.International Journal of Semantic Computing (IJSC). Vol 8(1), 2014.
 +  * Fusheng Wang, Cristobal Vergara-Niedermayr,​ Peiya Liu: Metadata Based Management and Sharing of Distributed Biomedical Data.International Journal of Metadata, Semantics and Ontologies (IJMSO), Special Issue on "​Metadata for e-Science and e-Research"​. Vol 9 (1), 2014.
  
 ==== 2013 ==== ==== 2013 ====
 +
   * Jun Kong, Lee A.D. Cooper, Fusheng Wang, Jingjing Gao, George Teodoro, Lisa Scarpace, Tom Mikkelsen, Matthew J. Schniederjan,​ Carlos S. Moreno, Joel H. Saltz and Daniel J. Brat: //​[[http://​www.plosone.org/​article/​info:​doi/​10.1371/​journal.pone.0081049|Machine-based Morphologic Analysis of Glioblastoma using Whole-slide Pathology Images Uncovers Clinically Relevant Molecular Correlates.]]//​ PLOS ONE. 8(11), 2013.   * Jun Kong, Lee A.D. Cooper, Fusheng Wang, Jingjing Gao, George Teodoro, Lisa Scarpace, Tom Mikkelsen, Matthew J. Schniederjan,​ Carlos S. Moreno, Joel H. Saltz and Daniel J. Brat: //​[[http://​www.plosone.org/​article/​info:​doi/​10.1371/​journal.pone.0081049|Machine-based Morphologic Analysis of Glioblastoma using Whole-slide Pathology Images Uncovers Clinically Relevant Molecular Correlates.]]//​ PLOS ONE. 8(11), 2013.
   * Jun Kong, Fusheng Wang, George Teodoro, Lee Cooper, Carlos Moreno, Tahsin Kurc, Tony Pan, Joel Saltz, and Daniel Brat: //​[[http://​ieeexplore.ieee.org/​stamp/​stamp.jsp?​arnumber=06732495|High-Performance Computational Analysis of Glioblastoma Pathology Images with Database Support Identifies Molecular and Survival Correlates.]]//​ In Proc. of the IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Shanghai, China, December 18-21, 2013.   * Jun Kong, Fusheng Wang, George Teodoro, Lee Cooper, Carlos Moreno, Tahsin Kurc, Tony Pan, Joel Saltz, and Daniel Brat: //​[[http://​ieeexplore.ieee.org/​stamp/​stamp.jsp?​arnumber=06732495|High-Performance Computational Analysis of Glioblastoma Pathology Images with Database Support Identifies Molecular and Survival Correlates.]]//​ In Proc. of the IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Shanghai, China, December 18-21, 2013.
-  * Shuai Zheng, Fusheng Wang, James Lu: //​[[http://​www.ncbi.nlm.nih.gov/​pubmed/​24551429|ASLForm:​ An Adaptive Self Learning Medical Form Generating System.]]// In Proc. of AMIA Annual Symposium, Washington, DC, November 16-20, 2013. +  * Shuai Zheng, Fusheng Wang, James Lu: //​[[http://​www.ncbi.nlm.nih.gov/​pubmed/​24551429|ASLForm:​ An Adaptive Self Learning Medical Form Generating System.]]// In Proc. of AMIA Annual Symposium, Washington, DC, November 16-20, 2013.
   * Ablimit Aji, Xiling Sun, Hoang Vo, Qiaoling Liu, Rubao Lee, Xiaodong Zhang, Joel Saltz and Fusheng Wang: //​[[http://​dl.acm.org/​citation.cfm?​id=2525320|Demonstration of Hadoop-GIS: A Spatial Data Warehousing System Over MapReduce.]]//​ Demo Paper, in Proceedings of the 21st ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems (ACM SIGSPATIAL GIS 2013), November 5-8, 2013, Orlando, Florida, USA.   * Ablimit Aji, Xiling Sun, Hoang Vo, Qiaoling Liu, Rubao Lee, Xiaodong Zhang, Joel Saltz and Fusheng Wang: //​[[http://​dl.acm.org/​citation.cfm?​id=2525320|Demonstration of Hadoop-GIS: A Spatial Data Warehousing System Over MapReduce.]]//​ Demo Paper, in Proceedings of the 21st ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems (ACM SIGSPATIAL GIS 2013), November 5-8, 2013, Orlando, Florida, USA.
   * David A Gutman, Jake Cobb, Dhananjaya Somanna, Yuna Park, Fusheng Wang, Tahsin Kurc, Joel H Saltz, Daniel J Brat, Lee AD Cooper: //​[[http://​www.ncbi.nlm.nih.gov/​pubmed/​23893318|Cancer Digital Slide Archive: An Informatics Resource to Support Integrated In Silico Analysis of TCGA Pathology Data.]]// Journal of the American Medical Informatics Association (JAMIA) 2013 Nov 1;​20(6):​1091-1098.   * David A Gutman, Jake Cobb, Dhananjaya Somanna, Yuna Park, Fusheng Wang, Tahsin Kurc, Joel H Saltz, Daniel J Brat, Lee AD Cooper: //​[[http://​www.ncbi.nlm.nih.gov/​pubmed/​23893318|Cancer Digital Slide Archive: An Informatics Resource to Support Integrated In Silico Analysis of TCGA Pathology Data.]]// Journal of the American Medical Informatics Association (JAMIA) 2013 Nov 1;​20(6):​1091-1098.
   * Ablimit Aji, Fusheng Wang, Hoang Vo, Rubao Lee, Qiaoling Liu, Xiaodong Zhang, Joel Saltz: //​[[http://​www.vldb.org/​pvldb/​vol6/​p1009-aji.pdf|Hadoop-GIS:​ A Spatial Data Warehousing System Over MapReduce.]]//​ In Proc. of the 39th International Conference on Very Large Databases (VLDB'​2013),​ Trento, Italy, August 26-30, 2013.   * Ablimit Aji, Fusheng Wang, Hoang Vo, Rubao Lee, Qiaoling Liu, Xiaodong Zhang, Joel Saltz: //​[[http://​www.vldb.org/​pvldb/​vol6/​p1009-aji.pdf|Hadoop-GIS:​ A Spatial Data Warehousing System Over MapReduce.]]//​ In Proc. of the 39th International Conference on Very Large Databases (VLDB'​2013),​ Trento, Italy, August 26-30, 2013.
-  * Cristobal Vergara-Niedermayr,​ Fusheng Wang, Tony Pan, Tahsin Kurc, Joel Saltz: //​[[http://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC4185431/​|Semantically Interoperable XML Data.]]// [[http://​www.worldscientific.com/​worldscinet/​ijsc|International Journal of Semantic Computing (IJSC)]]. Vol 7(3), 2013. +  * Cristobal Vergara-Niedermayr,​ Fusheng Wang, Tony Pan, Tahsin Kurc, Joel Saltz: //​[[http://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC4185431/​|Semantically Interoperable XML Data.]]// [[http://​www.worldscientific.com/​worldscinet/​ijsc|International Journal of Semantic Computing (IJSC)]]. Vol 7(3), 2013.
   * Yingjie Shi, Xiaofeng Meng, Fusheng Wang, Yantao Gan: //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications.html|HEDC++:​ An Extended Histogram Estimator for Data in the Cloud.]]// Journal of Computer Science and Technology(JCST),​ Special Issue on Cloud Data Management. 28(6): 973-988 Nov. 2013.   * Yingjie Shi, Xiaofeng Meng, Fusheng Wang, Yantao Gan: //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications.html|HEDC++:​ An Extended Histogram Estimator for Data in the Cloud.]]// Journal of Computer Science and Technology(JCST),​ Special Issue on Cloud Data Management. 28(6): 973-988 Nov. 2013.
-  * Fusheng Wang, Jun Kong, Jingjing Gao, David Adler, Lee Cooper, Cristobal Vergara-Niedermayr,​ Zhengwen Zhou, Bryan Katigbak, Tashin Kurc, Daniel Brat and Joel Saltz: //​[[http://​www.jpathinformatics.org/​text.asp?​2013/​4/​1/​5/​108543|A High-Performance Spatial Database Based Approach for Pathology Imaging Algorithm Evaluation.]]//​ Journal of Pathology Informatics. 2013, 4:5. \\+  * Fusheng Wang, Jun Kong, Jingjing Gao, David Adler, Lee Cooper, Cristobal Vergara-Niedermayr,​ Zhengwen Zhou, Bryan Katigbak, Tashin Kurc, Daniel Brat and Joel Saltz: //​[[http://​www.jpathinformatics.org/​text.asp?​2013/​4/​1/​5/​108543|A High-Performance Spatial Database Based Approach for Pathology Imaging Algorithm Evaluation.]]//​ Journal of Pathology Informatics. 2013, 4:5.
  
 ==== 2012 ==== ==== 2012 ====
 +
   * Ablimit Aji, Fusheng Wang and Joel Saltz: //​[[http://​dl.acm.org/​citation.cfm?​id=2424361|Towards Building a High Performance Spatial Query System for Large Scale Medical Imaging Data.]] // In Proceedings of the 20th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems (ACM SIGSPATIAL GIS 2012), Redondo Beach, California, USA, November 6-9, 2012.   * Ablimit Aji, Fusheng Wang and Joel Saltz: //​[[http://​dl.acm.org/​citation.cfm?​id=2424361|Towards Building a High Performance Spatial Query System for Large Scale Medical Imaging Data.]] // In Proceedings of the 20th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems (ACM SIGSPATIAL GIS 2012), Redondo Beach, California, USA, November 6-9, 2012.
   * Yingjie Shi, Xiaofeng Meng, Fusheng Wang and Yantao Gan: //​[[http://​dl.acm.org/​citation.cfm?​id=2398423|You Can Stop Early with COLA: Online Processing of Aggregate Queries in the Cloud.]]// Full Paper, In Proceedings of the 21st ACM International Conference on Information and Knowledge Management (CIKM'​2012),​ Maui, USA, 2012.   * Yingjie Shi, Xiaofeng Meng, Fusheng Wang and Yantao Gan: //​[[http://​dl.acm.org/​citation.cfm?​id=2398423|You Can Stop Early with COLA: Online Processing of Aggregate Queries in the Cloud.]]// Full Paper, In Proceedings of the 21st ACM International Conference on Information and Knowledge Management (CIKM'​2012),​ Maui, USA, 2012.
   * Shuai Zheng, Fusheng Wang and James Lu: //​[[http://​dl.acm.org/​citation.cfm?​id=2389684|Bridging the Unstructured and Structured Worlds: an Adaptive Self Learning Medical Form Generating System.]]// In Proceedings of the Second International Workshop on Managing Interoperability and compleXity in Health Systems (MIXHS'​2012),​ in conjunction with CIKM 2012, Maui, USA, 2012.   * Shuai Zheng, Fusheng Wang and James Lu: //​[[http://​dl.acm.org/​citation.cfm?​id=2389684|Bridging the Unstructured and Structured Worlds: an Adaptive Self Learning Medical Form Generating System.]]// In Proceedings of the Second International Workshop on Managing Interoperability and compleXity in Health Systems (MIXHS'​2012),​ in conjunction with CIKM 2012, Maui, USA, 2012.
   * Yingjie Shi, Xiaofeng Meng, Fusheng Wang, Yantao Gan: //​[[http://​dl.acm.org/​citation.cfm?​id=2390032|HEDC:​ A Histogram Estimator for Data in the Cloud.]]// In Proceedings of the Fourth International Workshop on Cloud Data Management (CloudDB'​2012),​ in conjunction with CIKM 2012, Maui, USA, 2012.   * Yingjie Shi, Xiaofeng Meng, Fusheng Wang, Yantao Gan: //​[[http://​dl.acm.org/​citation.cfm?​id=2390032|HEDC:​ A Histogram Estimator for Data in the Cloud.]]// In Proceedings of the Fourth International Workshop on Cloud Data Management (CloudDB'​2012),​ in conjunction with CIKM 2012, Maui, USA, 2012.
-  * Kaibo Wang, Yin Huai, Rubao Lee, Fusheng Wang, Xiaodong Zhang and Joel Saltz: //​[[http://​vldb.org/​pvldb/​vol5/​p1543_kaibowang_vldb2012.pdf|Accelerating Pathology Image Data Cross-Comparison on CPU-GPU Hybrid Systems]]//​. In Proceedings of the 38th International Conference on Very Large Data Bases (VLDB'​2012),​ Istanbul, Turkey, 2012. Vol 5(11):​1543-1554. ​+  * Kaibo Wang, Yin Huai, Rubao Lee, Fusheng Wang, Xiaodong Zhang and Joel Saltz: //​[[http://​vldb.org/​pvldb/​vol5/​p1543_kaibowang_vldb2012.pdf|Accelerating Pathology Image Data Cross-Comparison on CPU-GPU Hybrid Systems]]//​. In Proceedings of the 38th International Conference on Very Large Data Bases (VLDB'​2012),​ Istanbul, Turkey, 2012. Vol 5(11):​1543-1554.
   * Ablimit Aji and Fusheng Wang: //​[[http://​dl.acm.org/​citation.cfm?​doid=2213598.2213603|High Performance Spatial Query Processing for Large Scale Scientific Data]]//. In Proceedings of SIGMOD/PODS PhD Symposium 2012. Scottsdale, AZ, USA May 20, 2012.   * Ablimit Aji and Fusheng Wang: //​[[http://​dl.acm.org/​citation.cfm?​doid=2213598.2213603|High Performance Spatial Query Processing for Large Scale Scientific Data]]//. In Proceedings of SIGMOD/PODS PhD Symposium 2012. Scottsdale, AZ, USA May 20, 2012.
-  * Lee A. D. Cooper, Alexis B. Carter, Alton B. Farris, Fusheng Wang, Jun Kong, David A. Gutman, Patrick M. Widener, Tony C. Pan, Sharath R. Cholleti, Ashish Sharma, Tahsin M. Kurc, Daniel J. Brat and Joel H. Saltz: //​[[http://​ieeexplore.ieee.org/​xpl/​articleDetails.jsp?​arnumber=6155059|Digital Pathology: Data-Intensive Frontier in Medical Imaging]]//​. Proceedings of the IEEE 100(4): 991-1003 (2012). \\  * Patrick M. Widener, Tahsin Kurc, Wenjin Chen, Fusheng Wang, Lin Yang, Jun Hu, Vijay Kumar, Vicky Chu, Lee Cooper and Jun Kong, Ashish Sharma, Tony Pan, Joel Saltz, David Foran: //​[[http://​www.springerlink.com/​content/​9x24m86461582266/​|High Performance Computing Techniques for Scaling Image Analysis Workflows]]//​. Applied Parallel and Scientific Computing, p67-77, 2012.+  * Lee A. D. Cooper, Alexis B. Carter, Alton B. Farris, Fusheng Wang, Jun Kong, David A. Gutman, Patrick M. Widener, Tony C. Pan, Sharath R. Cholleti, Ashish Sharma, Tahsin M. Kurc, Daniel J. Brat and Joel H. Saltz: //​[[http://​ieeexplore.ieee.org/​xpl/​articleDetails.jsp?​arnumber=6155059|Digital Pathology: Data-Intensive Frontier in Medical Imaging]]//​. Proceedings of the IEEE 100(4): 991-1003 (2012). \\ * Patrick M. Widener, Tahsin Kurc, Wenjin Chen, Fusheng Wang, Lin Yang, Jun Hu, Vijay Kumar, Vicky Chu, Lee Cooper and Jun Kong, Ashish Sharma, Tony Pan, Joel Saltz, David Foran: //​[[http://​www.springerlink.com/​content/​9x24m86461582266/​|High Performance Computing Techniques for Scaling Image Analysis Workflows]]//​. Applied Parallel and Scientific Computing, p67-77, 2012.
   * Lee A.D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Doris Gao, Christina Appin, Sharath R. Cholleti, Tony C. Pan, Ashish Sharma, Lisa Scarpace, Tom Mikkelsen, Tahsin Kurc, Carlos S. Moreno, Daniel J. Brat, Joel H. Saltz: //​[[http://​jamia.bmj.com/​content/​19/​2/​317.full|Integrated Morphologic Analysis for the Identification and Characterization of Disease Subtypes]]//​. J Am Med Inform Assoc., Vol 19(2), 2012   * Lee A.D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Doris Gao, Christina Appin, Sharath R. Cholleti, Tony C. Pan, Ashish Sharma, Lisa Scarpace, Tom Mikkelsen, Tahsin Kurc, Carlos S. Moreno, Daniel J. Brat, Joel H. Saltz: //​[[http://​jamia.bmj.com/​content/​19/​2/​317.full|Integrated Morphologic Analysis for the Identification and Characterization of Disease Subtypes]]//​. J Am Med Inform Assoc., Vol 19(2), 2012
-  * Fusheng Wang, Tae W. Oh, Cristobal Vergara-Niedermayr,​ Tashin Kurc, Joel Saltz: //​[[http://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC3405921/​|Managing and Querying Whole Slide Images]]//. In Proc. of SPIE Medical Imaging, Feb 4-9, 2012. San Diego, California, USA. \\+  * Fusheng Wang, Tae W. Oh, Cristobal Vergara-Niedermayr,​ Tashin Kurc, Joel Saltz: //​[[http://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC3405921/​|Managing and Querying Whole Slide Images]]//. In Proc. of SPIE Medical Imaging, Feb 4-9, 2012. San Diego, California, USA.
  
 ==== 2011 ==== ==== 2011 ====
 +
   * Jun Kong, Lee A.D. Cooper, Fusheng Wang, David A. Gutman, Jingjing Gao, Candace Chisolm, Tony C. Pan, Patrick M. Wiedner, Daniel J. Brat and Joel Saltz: //​[[http://​www.ncbi.nlm.nih.gov/​pubmed/​21947516|Integrative,​ Multi-modal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images and Clinical Outcomes]]//​. IEEE Transactions on Biomedical Engineering. 2011 Dec;​58(12):​3469-74.   * Jun Kong, Lee A.D. Cooper, Fusheng Wang, David A. Gutman, Jingjing Gao, Candace Chisolm, Tony C. Pan, Patrick M. Wiedner, Daniel J. Brat and Joel Saltz: //​[[http://​www.ncbi.nlm.nih.gov/​pubmed/​21947516|Integrative,​ Multi-modal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images and Clinical Outcomes]]//​. IEEE Transactions on Biomedical Engineering. 2011 Dec;​58(12):​3469-74.
   * F. Wang, J. Kong, J. Gao, C. Vergara-Niedermayr,​ D. Alder, L. Cooper, W. Chen, T. Kurc and J. Saltz: //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​papers/​HPDBValidation-CameraReady.pdf|High Performance Analytical Pathology Imaging Database for Algorithm Evaluation]]//​. In Proc. of the Joint Workshop on High Performance and Distributed Computing for Medical Imaging (MICCAI/​MICCAI-DCI 2011), in conjunction with MICCAI. Toronto, Sep 22, 2011.   * F. Wang, J. Kong, J. Gao, C. Vergara-Niedermayr,​ D. Alder, L. Cooper, W. Chen, T. Kurc and J. Saltz: //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​papers/​HPDBValidation-CameraReady.pdf|High Performance Analytical Pathology Imaging Database for Algorithm Evaluation]]//​. In Proc. of the Joint Workshop on High Performance and Distributed Computing for Medical Imaging (MICCAI/​MICCAI-DCI 2011), in conjunction with MICCAI. Toronto, Sep 22, 2011.
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   * D. J. Foran, L. Yang, W. Chen, J. Hu, L. A. Goodell, M. Reiss, F. Wang, T. Kurc, T. Pan, A. Sharma and J. H. Saltz: //​[[http://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC3128405/​|ImageMiner:​ Comparative Analysis of Tissue Microarrays Using Content-based Image Retrieval, High-Performance Computing, and Grid Technology]]//​. J Am Med Inform Assoc. 2011 Jul 1;​18(4):​403-15.   * D. J. Foran, L. Yang, W. Chen, J. Hu, L. A. Goodell, M. Reiss, F. Wang, T. Kurc, T. Pan, A. Sharma and J. H. Saltz: //​[[http://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC3128405/​|ImageMiner:​ Comparative Analysis of Tissue Microarrays Using Content-based Image Retrieval, High-Performance Computing, and Grid Technology]]//​. J Am Med Inform Assoc. 2011 Jul 1;​18(4):​403-15.
   * R. Lee, T. Luo, Y. Huai, F. Wang, Y. He, X. Zhang: //​[[http://​ieeexplore.ieee.org/​xpl/​freeabs_all.jsp?​arnumber=5961685|YSmart:​ Yet Another SQL-to-MapReduce Translator]]//​. In Proc. of the 31st Int'l Conference on Distributed Computing Systems (ICDCS 2011), June 20-24, 2011. Minneapolis,​ Minnesota, USA. (Best paper award)   * R. Lee, T. Luo, Y. Huai, F. Wang, Y. He, X. Zhang: //​[[http://​ieeexplore.ieee.org/​xpl/​freeabs_all.jsp?​arnumber=5961685|YSmart:​ Yet Another SQL-to-MapReduce Translator]]//​. In Proc. of the 31st Int'l Conference on Distributed Computing Systems (ICDCS 2011), June 20-24, 2011. Minneapolis,​ Minnesota, USA. (Best paper award)
-  * L. Cooper, J. Kong, F. Wang, T. Kurc, C. S. Moreno, D. J. Brat, J. H. Saltz: //​[[http://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC3241612/​|Morphological Signatures and Genomic Correlates in Glioblastoma]]//​. In Proc. of the 8th IEEE International Symposium on Biomedical Imaging (ISBI 2011). Chicago, Illinois, USA, March 30 - April 2, 2011. +  * L. Cooper, J. Kong, F. Wang, T. Kurc, C. S. Moreno, D. J. Brat, J. H. Saltz: //​[[http://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC3241612/​|Morphological Signatures and Genomic Correlates in Glioblastoma]]//​. In Proc. of the 8th IEEE International Symposium on Biomedical Imaging (ISBI 2011). Chicago, Illinois, USA, March 30 - April 2, 2011.
   * J. Kong, L. Cooper, F. Wang, C. Chisolm, C. Moreno, T. Kurc, P. Widener, D. Brat, J. Saltz: //​[[http://​ieeexplore.ieee.org/​xpl/​freeabs_all.jsp?​arnumber=5872833|A Comprehensive Framework for Classification of Nuclei in Digital Microscopy Imaging: An Application to Diffuse Gliomas]]//​. In Proc. of the 8th IEEE International Symposium on Biomedical Imaging (ISBI 2011). Chicago, Illinois, USA, March 30 - April 2, 2011.   * J. Kong, L. Cooper, F. Wang, C. Chisolm, C. Moreno, T. Kurc, P. Widener, D. Brat, J. Saltz: //​[[http://​ieeexplore.ieee.org/​xpl/​freeabs_all.jsp?​arnumber=5872833|A Comprehensive Framework for Classification of Nuclei in Digital Microscopy Imaging: An Application to Diffuse Gliomas]]//​. In Proc. of the 8th IEEE International Symposium on Biomedical Imaging (ISBI 2011). Chicago, Illinois, USA, March 30 - April 2, 2011.
-  * F. Wang, R. Lee, X. Zhang and J. Saltz: //​[[http://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC3098745/​|Towards Building High Performance Medical Image Management System for Clinical Trials]]//. In Proc. of SPIE Medical Imaging, Orland, Florida, USA, Feb 12-17, 2011. \\  2010:+  * F. Wang, R. Lee, X. Zhang and J. Saltz: //​[[http://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC3098745/​|Towards Building High Performance Medical Image Management System for Clinical Trials]]//. In Proc. of SPIE Medical Imaging, Orland, Florida, USA, Feb 12-17, 2011. \\ 2010:
   * J. Gardner, L. Xiong, F. Wang, A. Post and J. Saltz: //​[[http://​portal.acm.org/​citation.cfm?​id=1883019|An Evaluation of Feature Sets and Sampling Techniques for De-identification of Medical Records]]//​. In Proc. of 1st ACM International Health Informatics Symposium. Arlington, Virginia, USA, November 11-12, 2010.   * J. Gardner, L. Xiong, F. Wang, A. Post and J. Saltz: //​[[http://​portal.acm.org/​citation.cfm?​id=1883019|An Evaluation of Feature Sets and Sampling Techniques for De-identification of Medical Records]]//​. In Proc. of 1st ACM International Health Informatics Symposium. Arlington, Virginia, USA, November 11-12, 2010.
   * T. Kurc, P. Widener, W. Chen, F. Wang, et. al.: //​[[http://​pleiad.umdnj.edu/​CBII/​pdfs/​hpc-miccai2010-djf.pdf|Grid-Enabled,​ High-performance Microscopy Image Analysis]]//​. In Proc. of the 2nd International Workshop on High-Performance Medical Image Computing for Image-Assisted Clinical Intervention and Decision-Making (HP-MICCAI2010). Beijing, China, September 24, 2010.   * T. Kurc, P. Widener, W. Chen, F. Wang, et. al.: //​[[http://​pleiad.umdnj.edu/​CBII/​pdfs/​hpc-miccai2010-djf.pdf|Grid-Enabled,​ High-performance Microscopy Image Analysis]]//​. In Proc. of the 2nd International Workshop on High-Performance Medical Image Computing for Image-Assisted Clinical Intervention and Decision-Making (HP-MICCAI2010). Beijing, China, September 24, 2010.
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   * F. Wang, T. Kurc, P. Widener, T. Pan, J. Kong, L. Cooper, D. Gutman, A. Sharma, S. Cholleti, V. Kumar, J. Saltz: //​[[http://​www.springerlink.com/​content/​26558247823nj715/​|High-performance Systems for In Silico Microscopy Imaging Studies]]//​. In Proc. of Seventh International Conference on Data Integration in the Life Sciences (DILS 2010), Gothenburg, Sweden, August 25-27, 2010.   * F. Wang, T. Kurc, P. Widener, T. Pan, J. Kong, L. Cooper, D. Gutman, A. Sharma, S. Cholleti, V. Kumar, J. Saltz: //​[[http://​www.springerlink.com/​content/​26558247823nj715/​|High-performance Systems for In Silico Microscopy Imaging Studies]]//​. In Proc. of Seventh International Conference on Data Integration in the Life Sciences (DILS 2010), Gothenburg, Sweden, August 25-27, 2010.
   * F. Wang, S. Liu and P. Liu: //​[[http://​www.sciencedirect.com/​science/​article/​pii/​S1574119209000960|A Temporal RFID Data Model for Querying Physical Objects]]//​. Journal of Pervasive and Mobile Computing, Volume 6, Issue 3, June 2010, Pages 382-397.   * F. Wang, S. Liu and P. Liu: //​[[http://​www.sciencedirect.com/​science/​article/​pii/​S1574119209000960|A Temporal RFID Data Model for Querying Physical Objects]]//​. Journal of Pervasive and Mobile Computing, Volume 6, Issue 3, June 2010, Pages 382-397.
-  * F. Wang et. al., //​[[http://​www.ncbi.nlm.nih.gov/​pubmed/​21218167|Managing and Querying Image Annotation and Markup in XML]]//. In Proc. of SPIE Medical Imaging, San Diego, 13 - 18 February 2010.  +  * F. Wang et. al., //​[[http://​www.ncbi.nlm.nih.gov/​pubmed/​21218167|Managing and Querying Image Annotation and Markup in XML]]//. In Proc. of SPIE Medical Imaging, San Diego, 13 - 18 February 2010. 
-  * +  * 
 ==== 2009 and before ==== ==== 2009 and before ====
 +
   * F. Wang, S. Liu and P. Liu: //​[[http://​www.springerlink.com/​content/​57p4q450514627v7/​|Complex RFID Event Processing]]//​. The International Journal on Very Large Data Bases (VLDBJ). Volume 18, Number 4 / August, 2009.   * F. Wang, S. Liu and P. Liu: //​[[http://​www.springerlink.com/​content/​57p4q450514627v7/​|Complex RFID Event Processing]]//​. The International Journal on Very Large Data Bases (VLDBJ). Volume 18, Number 4 / August, 2009.
-  * F. Wang, P. Hussels, P. Liu: //​[[http://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC3103222/​|Securely and Flexibly Sharing a Biomedical Data Management System]]//. In Proc of SPIE Medical Imaging 2009, Orlando, Florida, USA, February 7-12, 2009, 2009. \\+  * F. Wang, P. Hussels, P. Liu: //​[[http://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC3103222/​|Securely and Flexibly Sharing a Biomedical Data Management System]]//. In Proc of SPIE Medical Imaging 2009, Orlando, Florida, USA, February 7-12, 2009, 2009.
   * F. Wang, C. Zaniolo and X. Zhou: //​[[http://​www.springerlink.com/​content/​q489710714132272/​fulltext.pdf|ArchIS:​ An XML-Based Approach to Transaction-Time Temporal Database Systems]]//​. The International Journal on Very Large Data Bases (VLDBJ). Volume 17, Number 6 / November, 2008.   * F. Wang, C. Zaniolo and X. Zhou: //​[[http://​www.springerlink.com/​content/​q489710714132272/​fulltext.pdf|ArchIS:​ An XML-Based Approach to Transaction-Time Temporal Database Systems]]//​. The International Journal on Very Large Data Bases (VLDBJ). Volume 17, Number 6 / November, 2008.
   * F. Wang, C. Vergara-Niedermayr,​ [[http://​www.springerlink.com/​content/​x7225u20trjj5539/​|Collaboratively Sharing Scientific Data]]. In Proc. of the 4th International Conference on Collaborative Computing (CollaborateCom'​08). Orlando, FL, USA, November 13-16, 2008.   * F. Wang, C. Vergara-Niedermayr,​ [[http://​www.springerlink.com/​content/​x7225u20trjj5539/​|Collaboratively Sharing Scientific Data]]. In Proc. of the 4th International Conference on Collaborative Computing (CollaborateCom'​08). Orlando, FL, USA, November 13-16, 2008.
   * F. Wang, C. Zaniolo, //​[[http://​dx.doi.org/​10.1016/​j.datak.2007.08.002|Temporal Queries and Version Management for XML Document Archives]]//​. Journal of Data and Knowledge Engineering (DKE). Volume 65, Issue 2, May 2008, P304-324.   * F. Wang, C. Zaniolo, //​[[http://​dx.doi.org/​10.1016/​j.datak.2007.08.002|Temporal Queries and Version Management for XML Document Archives]]//​. Journal of Data and Knowledge Engineering (DKE). Volume 65, Issue 2, May 2008, P304-324.
-  * T. Xia, F. Wang, S. Liu and S. Palanivelu: //​[[http://​portal.acm.org/​citation.cfm?​id=1713359|Flexible Multi-Dimensional Indexing Server for Searching Non-Textual Diagnostic Annotations]]//​. In Proc. of the IASTED International Conference on Internet and Multimedia Systems and Applications (EuroIMSA'​08). Innsbruck, Austria. March 17-19, 2008. +  * T. Xia, F. Wang, S. Liu and S. Palanivelu: //​[[http://​portal.acm.org/​citation.cfm?​id=1713359|Flexible Multi-Dimensional Indexing Server for Searching Non-Textual Diagnostic Annotations]]//​. In Proc. of the IASTED International Conference on Internet and Multimedia Systems and Applications (EuroIMSA'​08). Innsbruck, Austria. March 17-19, 2008.
   * F. Wang, et al.://​[[http://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC3098743/​|An Adaptable XML Based Approach for Scientific Data Management and Integration]]//​. In Proc. of SPIE Medical Imaging 2008, San Diego, California, USA, February 16-21, 2008.   * F. Wang, et al.://​[[http://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC3098743/​|An Adaptable XML Based Approach for Scientific Data Management and Integration]]//​. In Proc. of SPIE Medical Imaging 2008, San Diego, California, USA, February 16-21, 2008.
   * F. Wang, C. Rabsch and P. Liu://​[[http://​ieeexplore.ieee.org/​stamp/​stamp.jsp?​tp=&​arnumber=4497531&​userType=inst|Native Web Browser Enabled SVG-based Collaborative Multimedia Annotation for Medical Images]]//. In Proc. of the 24th International Conference on Data Engineering (ICDE'​08),​ April 7-12, 2008, Cancun, Mexico.   * F. Wang, C. Rabsch and P. Liu://​[[http://​ieeexplore.ieee.org/​stamp/​stamp.jsp?​tp=&​arnumber=4497531&​userType=inst|Native Web Browser Enabled SVG-based Collaborative Multimedia Annotation for Medical Images]]//. In Proc. of the 24th International Conference on Data Engineering (ICDE'​08),​ April 7-12, 2008, Cancun, Mexico.
-  * F. Wang, C. Rabsch and P. Liu://​[[http://​www.computer.org/​portal/​web/​csdl/​doi/​10.1109/​BIBM.2007.52|Using SVG to Model and Query Image Annotations and their History]]//​. In Proc. of IEEE International Conference on Bioinformatics and Biomedicine 2007 (BIBM'​07),​ San Jose, USA, November 2-4, 2007. \\ +  * F. Wang, C. Rabsch and P. Liu://​[[http://​www.computer.org/​portal/​web/​csdl/​doi/​10.1109/​BIBM.2007.52|Using SVG to Model and Query Image Annotations and their History]]//​. In Proc. of IEEE International Conference on Bioinformatics and Biomedicine 2007 (BIBM'​07),​ San Jose, USA, November 2-4, 2007. 
-  * F. Wang, P. Bourgue, G. Hackenberg, M. Wang, D. Kaltschmidt,​ C. Rabsch, P. Kling, G. Madlmayr, P. Liu, J. Pearson and J. Carpinelli: //​[[http://​portal.acm.org/​citation.cfm?​id=1326001|SciPort:​ An Adaptable Scientific Data Integration Platform for Collaborative Scientific Research]]//​. In Proc. of the 33rd International Conference on Very Large Data Bases (VLDB'​2007),​ Vienna, Austria, September 23-28 2007. \\  * T. Xia, F. Wang, P. Liu: //​[[http://​www.springerlink.com/​content/​371513q650227t55/​|Managing and Searching Distributed Multidimensional Annotations with Large Scale Image Data]]//. In Proc. of International Workshop on Multimedia Content Analysis and Mining (MCAM'​07). WeiHai, China, June 30-July 1 2007. \\+  * F. Wang, P. Bourgue, G. Hackenberg, M. Wang, D. Kaltschmidt,​ C. Rabsch, P. Kling, G. Madlmayr, P. Liu, J. Pearson and J. Carpinelli: //​[[http://​portal.acm.org/​citation.cfm?​id=1326001|SciPort:​ An Adaptable Scientific Data Integration Platform for Collaborative Scientific Research]]//​. In Proc. of the 33rd International Conference on Very Large Data Bases (VLDB'​2007),​ Vienna, Austria, September 23-28 2007. \\ * T. Xia, F. Wang, P. Liu: //​[[http://​www.springerlink.com/​content/​371513q650227t55/​|Managing and Searching Distributed Multidimensional Annotations with Large Scale Image Data]]//. In Proc. of International Workshop on Multimedia Content Analysis and Mining (MCAM'​07). WeiHai, China, June 30-July 1 2007.
   * S. Liu, F. Wang, P. Liu: //​[[http://​ieeexplore.ieee.org/​xpls/​abs_all.jsp?​arnumber=4417135|Integrated RFID Data Modeling for Querying Physical Objects in RFID-enabled Pervasive Computing]]//​. In Proc. of the 8th International Conference on Mobile Data Management (MDM'​07). Mannheim, Germany, May 7 - 11, 2007.   * S. Liu, F. Wang, P. Liu: //​[[http://​ieeexplore.ieee.org/​xpls/​abs_all.jsp?​arnumber=4417135|Integrated RFID Data Modeling for Querying Physical Objects in RFID-enabled Pervasive Computing]]//​. In Proc. of the 8th International Conference on Mobile Data Management (MDM'​07). Mannheim, Germany, May 7 - 11, 2007.
-  * F. Wang, C. Rabsch, P. Kling, P. Liu and J. Pearson: //​[[http://​ieeexplore.ieee.org/​xpls/​abs_all.jsp?​arnumber=4221772|Web-based Collaborative Information Integration for Scientific Research]]//​. In Proc. of 23rd International Conference on Data Engineering (ICDE'​2007). Istanbul, Turkey; April 17-20, 2007. \\+  * F. Wang, C. Rabsch, P. Kling, P. Liu and J. Pearson: //​[[http://​ieeexplore.ieee.org/​xpls/​abs_all.jsp?​arnumber=4221772|Web-based Collaborative Information Integration for Scientific Research]]//​. In Proc. of 23rd International Conference on Data Engineering (ICDE'​2007). Istanbul, Turkey; April 17-20, 2007.
   * Y. Bai, F. Wang, P. Liu and S. Liu: //​[[http://​ieeexplore.ieee.org/​xpls/​abs_all.jsp?​arnumber=4221767|RFID Data Processing with a Data Stream Query Language]]//​. In Proc. of 23rd International Conference on Data Engineering (ICDE'​2007). Istanbul, Turkey; April 17-20, 2007.   * Y. Bai, F. Wang, P. Liu and S. Liu: //​[[http://​ieeexplore.ieee.org/​xpls/​abs_all.jsp?​arnumber=4221767|RFID Data Processing with a Data Stream Query Language]]//​. In Proc. of 23rd International Conference on Data Engineering (ICDE'​2007). Istanbul, Turkey; April 17-20, 2007.
-  * F. Wang, X. Zhou and C. Zaniolo: //​[[http://​portal.acm.org/​citation.cfm?​id=1183554|Bridging Relational Database History and the Web: the XML Approach]]//​. In the 8th ACM International Workshop on Web Information and Data Management (WIDM'​06),​ Arlington, Virginia, USA, November 10, 2006. \\+  * F. Wang, X. Zhou and C. Zaniolo: //​[[http://​portal.acm.org/​citation.cfm?​id=1183554|Bridging Relational Database History and the Web: the XML Approach]]//​. In the 8th ACM International Workshop on Web Information and Data Management (WIDM'​06),​ Arlington, Virginia, USA, November 10, 2006.
   * S. Liu, F. Wang, P. Liu: //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications/​cikm06poster.pdf|Integrated RFID Data Modeling: An Approach for Querying Physical Objects in Pervasive Computing]]//​. Poster Paper. In Proc. of the ACM 15th Conference on Information and Knowledge Management (CIKM'​06),​ Arlington, Virginia, USA, Nov 6-11, 2006.   * S. Liu, F. Wang, P. Liu: //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications/​cikm06poster.pdf|Integrated RFID Data Modeling: An Approach for Querying Physical Objects in Pervasive Computing]]//​. Poster Paper. In Proc. of the ACM 15th Conference on Information and Knowledge Management (CIKM'​06),​ Arlington, Virginia, USA, Nov 6-11, 2006.
-  * Y. Bai, F. Wang, P. Liu: //​[[http://​citeseerx.ist.psu.edu/​viewdoc/​summary?​doi=10.1.1.88.8170|Efficiently Filtering RFID Data Streams]]//​. In Proc. of the First International VLDB Workshop on Clean Databases (CleanDB'​06),​ Seoul, Korea, September 11, 2006. \\ +  * Y. Bai, F. Wang, P. Liu: //​[[http://​citeseerx.ist.psu.edu/​viewdoc/​summary?​doi=10.1.1.88.8170|Efficiently Filtering RFID Data Streams]]//​. In Proc. of the First International VLDB Workshop on Clean Databases (CleanDB'​06),​ Seoul, Korea, September 11, 2006. 
-  * X. Zhou, F. Wang and C. Zaniolo: //​[[http://​dl.acm.org/​citation.cfm?​id=2164786|Efficient Temporal Coalescing Query Support in Relational Database Systems ]]//. In Proc. of the 17th International Conference on Database and Expert Systems Applications (DEXA'​06),​ Krakow, Poland, September, 2006. ([[http://​link.springer.com/​chapter/​10.1007/​978-3-642-32597-7_32|The method was adopted by TeraData for its temporal database support.]])  +  * X. Zhou, F. Wang and C. Zaniolo: //​[[http://​dl.acm.org/​citation.cfm?​id=2164786|Efficient Temporal Coalescing Query Support in Relational Database Systems ]]//. In Proc. of the 17th International Conference on Database and Expert Systems Applications (DEXA'​06),​ Krakow, Poland, September, 2006. ([[http://​link.springer.com/​chapter/​10.1007/​978-3-642-32597-7_32|The method was adopted by TeraData for its temporal database support.]]) 
-  * F. Wang, S. Liu, P. Liu and Y. Bai: //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications.html|Bridging Physical and Virtual Worlds: Complex Event Processing for RFID Data Streams]]//​. In Proc. of the 10th International Conference on Extending Database Technology (EDBT'​2006),​ Munich, Germany, March, 2006. [[http://​edbticdt2016.labri.fr/?​tot_awards|EDBT 10-Year Test of Time Award]]. ​\\+  * F. Wang, S. Liu, P. Liu and Y. Bai: //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications.html|Bridging Physical and Virtual Worlds: Complex Event Processing for RFID Data Streams]]//​. In Proc. of the 10th International Conference on Extending Database Technology (EDBT'​2006),​ Munich, Germany, March, 2006. [[http://​edbticdt2016.labri.fr/?​tot_awards|EDBT 10-Year Test of Time Award]].
   * F. Wang, P. Liu, J. Pearson, F. Azar and G. Madlmayr, //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications/​icde06exp.pdf|Experiment Management with Metadata-based Integration for Collaborative Scientific Research]]//​. In Proc. of the 22nd International Conference on Data Engineering (ICDE'​2006),​ April 3-7, Atlanta, Georgia, USA, 2006.   * F. Wang, P. Liu, J. Pearson, F. Azar and G. Madlmayr, //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications/​icde06exp.pdf|Experiment Management with Metadata-based Integration for Collaborative Scientific Research]]//​. In Proc. of the 22nd International Conference on Data Engineering (ICDE'​2006),​ April 3-7, Atlanta, Georgia, USA, 2006.
-  * F. Wang, P. Liu, //​[[http://​www.vldb2005.org/​program/​paper/​wed/​p1128-wang.pdf|Temporal Management of RFID Data]]//. In Proc. of the 31st International Conference on Very Large Data Bases (VLDB'​05). Trondheim, Norway; August 30-September 2, 2005. p1128-1139. ​\\ +  * F. Wang, P. Liu, //​[[http://​www.vldb2005.org/​program/​paper/​wed/​p1128-wang.pdf|Temporal Management of RFID Data]]//. In Proc. of the 31st International Conference on Very Large Data Bases (VLDB'​05). Trondheim, Norway; August 30-September 2, 2005. p1128-1139. 
-  * F. Wang, C. Zaniolo, //​[[http://​portal.acm.org/​citation.cfm?​id=1101086|An XML-Based Approach to Publishing and Querying the History of Databases]]//​. World Wide Web: Internet and Web Information Systems, Kluwer, Vol.8, No.3, September, 2005. p233-259.  +  * F. Wang, C. Zaniolo, //​[[http://​portal.acm.org/​citation.cfm?​id=1101086|An XML-Based Approach to Publishing and Querying the History of Databases]]//​. World Wide Web: Internet and Web Information Systems, Kluwer, Vol.8, No.3, September, 2005. p233-259. 
-  * F. Wang, C. Zaniolo, and X. Zhou, //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications/​time05.pdf|Temporal XML? SQL Is Fighting Back!]]//. 12th International Symposium on Temporal Representation and Reasoning (TIME'​05),​ June, 2005. p47-55. ​\\+  * F. Wang, C. Zaniolo, and X. Zhou, //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications/​time05.pdf|Temporal XML? SQL Is Fighting Back!]]//. 12th International Symposium on Temporal Representation and Reasoning (TIME'​05),​ June, 2005. p47-55.
   * F. Wang, C. Zaniolo, //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications/​er04.pdf|XBiT:​ An XML-based Bitemporal Data Model]]//. In Proc. of the 23rd International Conference on Conceptual Modeling(ER'​04) Shanghai, China, November 2004. p810-824. [[http://​www3.cs.stonybrook.edu/​~fuswang/​publications/​er04abs.txt|Abstract]]   * F. Wang, C. Zaniolo, //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications/​er04.pdf|XBiT:​ An XML-based Bitemporal Data Model]]//. In Proc. of the 23rd International Conference on Conceptual Modeling(ER'​04) Shanghai, China, November 2004. p810-824. [[http://​www3.cs.stonybrook.edu/​~fuswang/​publications/​er04abs.txt|Abstract]]
-  * F. Wang, C. Zaniolo, //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications/​wise03.pdf|Publishing and Querying the Histories of Archived Relational Databases in XML]]//. In Proc. of the 4th International Conference on Web Information Systems Engineering (WISE'​03),​ Roma, Italy, December 2003. p93-102. ​\\+  * F. Wang, C. Zaniolo, //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications/​wise03.pdf|Publishing and Querying the Histories of Archived Relational Databases in XML]]//. In Proc. of the 4th International Conference on Web Information Systems Engineering (WISE'​03),​ Roma, Italy, December 2003. p93-102.
   * F. Wang, C. Zaniolo, //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications/​seke03.pdf|Representing and Querying the Evolution of Databases and their Schemas in XML]]//, Proceedings of the Fifteenth International Conference on Software Engineering & Knowledge Engineering (SEKE'​2003),​ Hotel Sofitel, San Francisco Bay, CA, USA, July 1-3, 2003.   * F. Wang, C. Zaniolo, //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications/​seke03.pdf|Representing and Querying the Evolution of Databases and their Schemas in XML]]//, Proceedings of the Fifteenth International Conference on Software Engineering & Knowledge Engineering (SEKE'​2003),​ Hotel Sofitel, San Francisco Bay, CA, USA, July 1-3, 2003.
-  * F. Wang, C. Zaniolo, //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications/​time03.pdf|Temporal Queries in XML Document Archives and Web Warehouses]]//​. In Proc. of the 10th International Symposium on Temporal Representation and Reasoning and 4th International Conference on Temporal Logic (TIME-ICTL'​03),​ Queensland, Australia, July 2003. p47-55. ​\\+  * F. Wang, C. Zaniolo, //​[[http://​www3.cs.stonybrook.edu/​~fuswang/​publications/​time03.pdf|Temporal Queries in XML Document Archives and Web Warehouses]]//​. In Proc. of the 10th International Symposium on Temporal Representation and Reasoning and 4th International Conference on Temporal Logic (TIME-ICTL'​03),​ Queensland, Australia, July 2003. p47-55.
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